Biobridge 0.1
Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them. ## Installation Firstly you need to install pyrosetta Then install biobridge ```sh pip install biobridge ``` ## Usage To use Biobridge in your project, import it for example: ``` python from biobridge import * # Create two proteins protein1 = Protein("Protein A", "ACDEFGHIKLMNPQRSTVWY") protein2 = Protein("Protein B", "YVWTSRQPNMLKIHGFEDCA") # Define bindings for the proteins protein1.add_binding("Site 1", "High") protein2.add_binding("Site 3", "Medium") # Create a cell with specific properties cell1 = Cell( name="Cell X", cell_type="Epithelial Cell", ) organelle = Mitochondrion(0.5, 100) # Add organelles to the cell cell1.add_organelle(organelle, quantity=10) cell1.add_organelle(Organelle("Nucleus", 1), quantity=1) cell1.add_organelle(Organelle("Ribosome", 100), quantity=100) cell1.add_chromosome(Chromosome(DNA("ATCG" * 1000), "Chromosome 1")) # Print cell details print("Cell X Description:") print(cell1) ``` ## The notable functions are: ```python from biobridge import * Cell() DNA() RNA() Protein() Chromosome() Environment() Tissue() System() ImageAnalyzer() Orchestrator() Virus() Infection() SQLDNAEncoder()
| Tags | python library python biopython machine-learning biology |
|---|---|
| License | Other |
| State | initial |
Homepage
Download
